bims: | Biomed News |
eLife Sprint 2020
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In no more than 200 words, please tell us about the problem you plan to address through your work at the Sprint: how does it relate to the Sprint’s themes, who this issue is affecting, and why is it an important issue to solve at the moment?
We submit this proposal under the assumptions that (1) the
sprint will be online and (2) there will be few submissions so
that organizers may consider a project outside the normal
maturity limits. It is “bims: Biomed News”. It’s mature. But
it’s misunderstood for many reasons: (1) it’s unprecedented; (2)
it has no external support; (3) its site is drab; (4) its
benefits can’t be demonstrated immediately; (5) it solves two
problems at the same time. Bims connects readers with new papers
selected by an expert on an area of interest. To qualify, papers
should be new, contain new results pertinent to the subject area
and be reasonably correct. It’s the job of the selector to
ensure that. The benefits are: (1) the selector stays current in
the subject area and (2) the selector can circulate the results
to enhance recognition. There are three public benefits. First,
democratizing access to knowledge. Most people can get access to
papers by writing to the authors. We tell them what papers to
get. Second, we could help emerging preprint efforts. Preprints
are not classified by journal. We can help them find an
audience. Third, we can help in the fight against fake science.
• In no more
than 200 words, tell us more about your idea for a
technology-focussed solution to the problem you described
above. Please feel free to include any relevant links (GitHub,
Twitter, etc), but please prioritise them so reviewers can focus
on the important ones within their time limit.
Bims has a basic technology in place. There is a public facing web
site at http://biomed.news. This looks very simple, but there are
serious technical chops. Thomas developed a PubMed indexer that finds
the new papers every week. He wrote a specialized web interface used
by selectors at http://ernad.biomed.news. It has five screens. The
first or last screens are used to select issues to work on or tell
users that there are none left. The second is to select papers that
are on the topic. The third screen is essentially the same as the
second. It’s used to narrow down papers that are on the topic by
filtering for other aspects. Finally, there is a screen that allows to
change the order of the papers. To aid selectors, Thomas makes
sophisticated use of SVM-based machine learning. It’s great if the
report is on real scientific papers. It’s good enough otherwise.
• In no more than 200
words, describe the work that you plan to carry out at the Sprint:
what do you envision achieving within the two days of the event, and
how can the Sprint help drive it forward?
As we pointed out, we are sending this proposal under the assumption
it will take place online. We also expect that the amount of time
spent by participants is reduced per day as we can’t expect
participants in remote time zones to be up at ghastly hours. We expect
essentially three activities. First, Gavin to provide background into
the organizational aspects. Thomas will shed light on technology
aspect. Then participants will be tasked with going through the web
site to try to find ways that we can better communicate what bims
actually is. We expect that there will quite a bit of time, as clearly
communicating the nature of the project is an unsolved
challenge. Finally, participants will have a chance to test the
machine learning and experience for themselves how much more powerful
it is compared to repeated keyword-based queries.
We do not
expect to make any substantial change to that infrastructure during
the sprint. Instead, ahead of the sprint, Thomas will reverse the
course of time, so to speak. He will prepare an enhancement that will
allow the release of back issues. Thus, Sprint participants can try
the system on issues going back to February 2017.
• In no more than
100 words, please tell us what skills are you looking for from
contributors at the Sprint, e.g. software development, UX, cloud
infrastructure, design, communication, users with the domain expertise
to test with. (Find out more about the expected participants and roles
at the Sprint).
As we said, we aim this to fit a reduced event. We don’t intend to do
technical work. Thus, we need subject experts and some good
communicators. But since there is broad coverage of themes, anybody
can start working on a subject just to get a feel of how it works.
• In no more than
200 words, please explain your plans to facilitate contributions from
Sprint participants: How do you plan to engage with and incorporate
the voices of Sprint participants with diverse backgrounds,
experiences and skill sets? What should contributors get from working
on the project?
Participants will have a broad interest in scholarly
communication. Bims is right of the heart of it. In that sense most
participants will be able to relate to it. In the system test, people
will be working on their own issue. PubMed has both technical and
non-technical biomedical research papers, so everybody will have some
topic that they can work on, and potentially keep after the sprint is
over.
As to what contributors get out of it, well let’s face it
… a lot of the benefit of the sprint is actually the fun of travelling
and seeing new places and meeting new people. This will be gone under
the assumption of an online event. Bims is radically new. It gets very
interesting once you start looking into the details of how it
works. Nobody will leave feeling bored. In addition, we think we can
make contributions by recruiting participants through talking to the
people we already have lined up as selectors. True this will not be
masses, otherwise bims would not need the sprint at all. But the
project has a tiny dedicated fan base.